La Trobe University (Albury/Wodonga)

Oct 5-6, 2016

9:30am - 4:30pm

Instructors: Ghulam Murtaza

Helpers:

General Information

Software Carpentry's mission is to help scientists and engineers get more research done in less time and with less pain by teaching them basic lab skills for scientific computing. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems.

For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing".

Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop.

Where: Computer lab 2, Albury-Wodonga Campus, La Trobe University. Get directions with OpenStreetMap or Google Maps.

Requirements: Participants are required to abide by Software Carpentry's Code of Conduct.

Contact: Please mail training@intersect.org.au for more information.


Schedule

Surveys

Please be sure to complete these surveys before and after the workshop.

Pre-workshop Survey

Post-workshop Survey

Day 1

09:30 Automating tasks with the Unix shell
11:00 Short break
12:30 Lunch break
13:30 Building programs with R
15:00 Short break
16:30 Wrap up

Day 2

09:30 Building programs with R (continued)
11:00 Short break
12:30 Lunch break
13:30 Version control with Git
15:00 Short break
16:30 Wrap-up

Syllabus

The Unix Shell

  • Files and directories
  • History and tab completion
  • Pipes and redirection
  • Looping over files
  • Creating and running shell scripts
  • Finding things
  • Reference...

Programming in R

  • Working with vectors and data frames
  • Reading and plotting data
  • Creating and using functions
  • Loops and conditionals
  • Using R from the command line
  • Reference...

Version Control with Git

  • Creating a repository
  • Recording changes to files: add, commit, ...
  • Viewing changes: status, diff, ...
  • Ignoring files
  • Working on the web: clone, pull, push, ...
  • Resolving conflicts
  • Open licenses
  • Where to host work, and why
  • Reference...